Ecological Processes

Mon, 01 Jan 0001 00:00:00 +0000

Filter ecological processes publications

Ecological Processes model publications and FAIR criterion assessments
Model citation	Coordination	Code available?	License?	DOI?	Documentation	Clean code
Dieckmann, U., & Doebeli, M. (1999). On the origin of species by sympatric speciation, Nature, 400(6742), 354-357. https://doi.org/10.1038/22521	dieckmann-doebeli-1999 Not yet started	No Code	No License	No DOI	Grade B
Tilman, D. (2004). Niche tradeoffs, neutrality, and community structure: A stochastic theory of resource competition, invasion, and community assembly. Proceedings of the National Academy of Sciences of the United States of America, 101(30), 10854-10861. https://doi.org/10.1073/pnas.0403458101	tilman-2004 Not yet started	No Code	No License	No DOI	Grade B
Cowen, R.K., Lwiza, K.M.M., Sponaugle, S., Paris, C.B., & Olson, D.B. (2000). Connectivity of marine populations: Open or closed? Science, 287(5454), 857-859. https://doi.org/10.1126/science.287.5454.857	cowen-etal-2000 Not yet started	No Code	No License	No DOI	Grade D
Soares-Filho, B.S., Nepstad, D.C., Curran, L.M., Cerqueira, G.C., Garcia, R.A., Ramos, C.A., Voll, E., McDonald, A., Lefebvre, P., & Schlesinger, P. (2006). Modelling conservation in the Amazon basin. Nature, 440(7083), 520-523. https://doi.org/10.1038/nature04389	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Coyte, K.Z., Schluter, J., & Foster, K.R. (2015). The ecology of the microbiome: Networks, competition, and stability. Science, 350(6261), 663-666. https://doi.org/10.1126/science.aad2602	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Bascompte, J., Jordano, P., & Olesen, J.M. (2006). Asymmetric coevolutionary networks facilitate biodiversity maintenance. Science, 312(5772), 431-433. https://doi.org/10.1126/science.1123412	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade A
Bever, J.D., Westover, K.M., & Antonovics, J. (1997). Incorporating the soil community into plant population dynamics: The utility of the feedback approach. Journal of Ecology, 85(5), 561-573. https://doi.org/10.2307/2960528	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Higgins, S.I., Bond, W.J., & Trollope, W.S.W. (2000). Fire, resprouting and variability: A recipe for grass-tree coexistence in savanna. Journal of Ecology, 88(2), 213-229. https://doi.org/10.1046/j.1365-2745.2000.00435.x	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Smith, B., Prentice, I.C., & Sykes, M.T. (2001). Representation of vegetation dynamics in the modelling of terrestrial ecosystems: Comparing two contrasting approaches within European climate space. Global Ecology and Biogeography, 10(6), 621-637. https://doi.org/10.1046/j.1466-822X.2001.t01-1-00256.x	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade E
Keeling, M.J. (1999). The effects of local spatial structure on epidemiological invasions. Proceedings of the Royal Society B: Biological Sciences, 266(1421), 859-867. https://doi.org/10.1098/rspb.1999.0716	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Moorcroft, P.R., Hurtt, G.C., & Pacala, S.W. (2001). A method for scaling vegetation dynamics: The ecosystem demography model (ED). Ecological Monographs, 71(4), 557-586. https://doi.org/10.1890/0012-9615(2001)071[0557:AMFSVD]2.0.CO;2	moorcroft-etal-2001 Not yet started	Has Code	No License	Has DOI	Grade A	Grade B
Enquist, B.J., & Niklas, K.J. (2001). Invariant scaling relations across tree-dominated communities. Nature, 410(6829), 655-660. https://doi.org/10.1038/35070500	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade D
Hallet, T.B., Coulson, T., Pilkington, J.G., Clulton-Brock, T.H., Pemberion, J.M., & Grenfell, B.T. (2004). Why large-scale climate indices seem to predict ecological processes better than local weather. Nature, 430(6995), 71-75. https://doi.org/10.1038/nature02708	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Goudet, J., Perrin, N., & Waser, P. (2002). Tests for sex-biased dispersal using bi-parentally inherited genetic markers. Molecular Ecology, 11(6), 1103-1114. https://doi.org/10.1046/j.1365-294x.2002.01496.x	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade D
Brose, U., Williams, R.J., & Martinez, N.D. (2006). Allometric scaling enhances stability in complex food webs. Ecology Letters, 9(11), 1228-1236. https://doi.org/10.1111/j.1461-0248.2006.00978.x	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Chave, J., Muller-Landau, H. C., & Levin, S. A. (2002). Comparing classical community models: theoretical consequences for patterns of diversity. The American Naturalist, 159(1), 1-23. https://doi.org/10.1086/324112	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Alroy, J. (2001). A multispecies overkill simulation of the end-Pleistocene megafaunal mass extinction. Science, 292(5523), 1893-1896. https://doi.org/10.1126/science.1059342	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade E
Smith, T., & Huston, M. (1989). A theory of the spatial and temporal dynamics of plant communities. Vegetatio, 83(1-2), 49-69. https://doi.org/10.1007/BF00031680	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade D
Zollner, P.A., & Lima, S.L. (1999). Search strategies for landscape-level interpatch movements. Ecology, 80(3), 1019-1030. https://doi.org/10.1890/0012-9658(1999)080[1019:SSFLLI]2.0.CO;2	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade D
Olden, J.D., & Poff, N.L. (2003). Toward a Mechanistic Understanding and Prediction of Biotic Homogenization. American Naturalist, 162(4), 442-460. https://doi.org/10.1086/378212	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade C
Gustafson, E.J., & Gardner, R.H. (1996). The effect of landscape heterogeneity on the probability of patch colonization. Ecology, 77(1), 94-107. https://doi.org/10.2307/2265659	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B
Balagaddé, F.K., Song, H., Ozaki, J., Collins, C.H., Barnet, M., Arnold, F.H., Quake, S.R., & You, L. (2008). A synthetic Escherichia coli predator-prey ecosystem. Molecular Systems Biology, 4, art. no. 187. https://doi.org/10.1038/msb.2008.24	Create Issue (opens in a new tab)	Has Code	No License	No DOI	Grade B	Grade E
Morin, X., & Thuiller, W. (2009). Comparing niche- and process-based models to reduce prediction uncertainty in species range shifts under climate change. Ecology, 90(5), 1301-1313. https://doi.org/10.1890/08-0134.1	Create Issue (opens in a new tab)	No Code	No License	No DOI	Grade B

Ecological Processes on Making Models FAIR

Ecological Processes