Model Publications

A growing bibliography of publications whose computational models are being assessed and made FAIR through this initiative.

Download all references as publications.bib.

• The ecology of the microbiome: Networks, competition, and stability

  Katharine Z. Coyte, Jonas Schluter, Kevin R. Foster

  2015ScienceVol. 350pp. 663–666

  DOI: 10.1126/science.aad2602

  Full record

  Citation key

  coyte-etal-2015

  Entry type

  article

  issn

  1095-9203

  url

  http://dx.doi.org/10.1126/science.aad2602

  doi

  10.1126/science.aad2602

  number

  6261

  publisher

  American Association for the Advancement of Science (AAAS)

  month

  11

• An agent-based simulation system for concert venue crowd evacuation modeling in the presence of a fire disaster

  Neal Wagner, Vikas Agrawal

  2014Expert Systems with ApplicationsVol. 41pp. 2807–2815

  DOI: 10.1016/j.eswa.2013.10.013

  Full record

  Citation key

  wagner-agrawal-2014

  Entry type

  article

  issn

  0957-4174

  url

  http://dx.doi.org/10.1016/j.eswa.2013.10.013

  doi

  10.1016/j.eswa.2013.10.013

  number

  6

  publisher

  Elsevier BV

  month

  5

• Integration of logistic regression, Markov chain and cellular automata models to simulate urban expansion

  Jamal Jokar Arsanjani, Marco Helbich, Wolfgang Kainz, Ali Darvishi Boloorani

  2013International Journal of Applied Earth Observation and GeoinformationVol. 21pp. 265–275

  DOI: 10.1016/j.jag.2011.12.014

  Full record

  Citation key

  arsanjani-etal-2013

  Entry type

  article

  issn

  1569-8432

  url

  http://dx.doi.org/10.1016/j.jag.2011.12.014

  doi

  10.1016/j.jag.2011.12.014

  publisher

  Elsevier BV

  month

  4

• Land cover change or land‐use intensification: simulating land system change with a global‐scale land change model

  Sanneke van Asselen, Peter H. Verburg

  2013Global Change BiologyVol. 19pp. 3648–3667

  DOI: 10.1111/gcb.12331

  Full record

  Citation key

  van-asselen-verburg-2013

  Entry type

  article

  issn

  1365-2486

  url

  http://dx.doi.org/10.1111/gcb.12331

  doi

  10.1111/gcb.12331

  number

  12

  publisher

  Wiley

  month

  8

• Optimal interdependence between networks for the evolution of cooperation

  Zhen Wang, Attila Szolnoki, Matjaž Perc

  2013Scientific ReportsVol. 3

  DOI: 10.1038/srep02470

  Full record

  Citation key

  wang-etal-2013

  Entry type

  article

  issn

  2045-2322

  url

  http://dx.doi.org/10.1038/srep02470

  doi

  10.1038/srep02470

  number

  1

  publisher

  Springer Science, Business Media LLC

  month

  8

• Assessing the impact of future land-use changes on hydrological processes in the Elbow River watershed in southern Alberta, Canada

  G.N. Wijesekara, A. Gupta, C. Valeo, J.-G. Hasbani, Y. Qiao, et al.

  2012Journal of HydrologyVol. 412-413pp. 220–232

  DOI: 10.1016/j.jhydrol.2011.04.018

  Full record

  Citation key

  wijesekara-etal-2012

  Entry type

  article

  issn

  0022-1694

  url

  http://dx.doi.org/10.1016/j.jhydrol.2011.04.018

  doi

  10.1016/j.jhydrol.2011.04.018

  publisher

  Elsevier BV

  month

  1

• A dynamic cellular automaton model for evacuation process with obstacles

  R. Alizadeh

  2011Safety ScienceVol. 49pp. 315–323

  DOI: 10.1016/j.ssci.2010.09.006

  Full record

  Citation key

  alizadeh-2011

  Entry type

  article

  issn

  0925-7535

  url

  http://dx.doi.org/10.1016/j.ssci.2010.09.006

  doi

  10.1016/j.ssci.2010.09.006

  number

  2

  publisher

  Elsevier BV

  month

  2

• Competitive and cooperative metabolic interactions in bacterial communities

  Shiri Freilich, Raphy Zarecki, Omer Eilam, Ella Shtifman Segal, Christopher S. Henry, et al.

  2011Nature CommunicationsVol. 2

  DOI: 10.1038/ncomms1597

  Full record

  Citation key

  freilich-etal-2011

  Entry type

  article

  issn

  2041-1723

  url

  http://dx.doi.org/10.1038/ncomms1597

  doi

  10.1038/ncomms1597

  number

  1

  publisher

  Springer Science, Business Media LLC

  month

  12

• How simple rules determine pedestrian behavior and crowd disasters

  Mehdi Moussaïd, Dirk Helbing, Guy Theraulaz

  2011Proceedings of the National Academy of SciencesVol. 108pp. 6884–6888

  DOI: 10.1073/pnas.1016507108

  Full record

  Citation key

  moussaid-etal-2011

  Entry type

  article

  issn

  1091-6490

  url

  http://dx.doi.org/10.1073/pnas.1016507108

  doi

  10.1073/pnas.1016507108

  number

  17

  publisher

  National Academy of Sciences

  month

  4

• Simulation of land use spatial pattern of towns and villages based on CA–Markov model

  Lingling Sang, Chao Zhang, Jianyu Yang, Dehai Zhu, Wenju Yun

  2011Mathematical and Computer ModellingVol. 54pp. 938–943

  DOI: 10.1016/j.mcm.2010.11.019

  Full record

  Citation key

  sang-etal-2011

  Entry type

  article

  issn

  0895-7177

  url

  http://dx.doi.org/10.1016/j.mcm.2010.11.019

  doi

  10.1016/j.mcm.2010.11.019

  number

  3-4

  publisher

  Elsevier BV

  month

  8

• An agent-based simulation model of human–environment interactions in agricultural systems

  Pepijn Schreinemachers, Thomas Berger

  2011Environmental Modelling & SoftwareVol. 26pp. 845–859

  DOI: 10.1016/j.envsoft.2011.02.004

  Full record

  Citation key

  schreinemachers-berger-2011

  Entry type

  article

  issn

  1364-8152

  url

  http://dx.doi.org/10.1016/j.envsoft.2011.02.004

  doi

  10.1016/j.envsoft.2011.02.004

  number

  7

  publisher

  Elsevier BV

  month

  7

• Evolutionary establishment of moral and double moral standards through spatial interactions

  Dirk Helbing, Attila Szolnoki, Matjaž Perc, György Szabó

  2010PLoS Computational BiologyVol. 6pp. e1000758

  DOI: 10.1371/journal.pcbi.1000758

  Full record

  Citation key

  helbing-etal-2010

  Entry type

  article

  issn

  1553-7358

  url

  http://dx.doi.org/10.1371/journal.pcbi.1000758

  doi

  10.1371/journal.pcbi.1000758

  number

  4

  publisher

  Public Library of Science (PLoS)

  editor

  Carl T. Bergstrom

  month

  4

• Heterogeneous aspirations promote cooperation in the prisoner’s dilemma game

  Matjaž Perc, Zhen Wang

  2010PLoS ONEVol. 5pp. e15117

  DOI: 10.1371/journal.pone.0015117

  Full record

  Citation key

  perc-wang-2010

  Entry type

  article

  issn

  1932-6203

  url

  http://dx.doi.org/10.1371/journal.pone.0015117

  doi

  10.1371/journal.pone.0015117

  number

  12

  publisher

  Public Library of Science (PLoS)

  editor

  James A. R. Marshall

  month

  12

• The outbreak of cooperation among success-driven individuals under noisy conditions

  Dirk Helbing, Wenjian Yu

  2009Proceedings of the National Academy of SciencesVol. 106pp. 3680–3685

  DOI: 10.1073/pnas.0811503106

  Full record

  Citation key

  helbing-yu-2009

  Entry type

  article

  issn

  1091-6490

  url

  http://dx.doi.org/10.1073/pnas.0811503106

  doi

  10.1073/pnas.0811503106

  number

  10

  publisher

  National Academy of Sciences

  month

  3

• Rural sustainability under threat in Zimbabwe – Simulation of future land use/cover changes in the Bindura district based on the Markov-cellular automata model

  Courage Kamusoko, Masamu Aniya, Bongo Adi, Munyaradzi Manjoro

  2009Applied GeographyVol. 29pp. 435–447

  DOI: 10.1016/j.apgeog.2008.10.002

  Full record

  Citation key

  kamusoko-etal-2009

  Entry type

  article

  issn

  0143-6228

  url

  http://dx.doi.org/10.1016/j.apgeog.2008.10.002

  doi

  10.1016/j.apgeog.2008.10.002

  number

  3

  publisher

  Elsevier BV

  month

  7

• A predictive collision avoidance model for pedestrian simulation

  Ioannis Karamouzas, Peter Heil, Pascal van Beek, Mark H. Overmars

  2009pp. 41–52

  DOI: 10.1007/978-3-642-10347-6_4

  Full record

  Citation key

  karamouzas-etal-2009

  Entry type

  inbook

  isbn

  9783642103476

  issn

  1611-3349

  url

  http://dx.doi.org/10.1007/978-3-642-10347-6_4

  doi

  10.1007/978-3-642-10347-6_4

  booktitle

  Motion in games

  publisher

  Springer Berlin Heidelberg

• Comparing niche‐ and process‐based models to reduce prediction uncertainty in species range shifts under climate change

  Xavier Morin, Wilfried Thuiller

  2009EcologyVol. 90pp. 1301–1313

  DOI: 10.1890/08-0134.1

  Full record

  Citation key

  morin-thuiller-2009

  Entry type

  article

  issn

  1939-9170

  url

  http://dx.doi.org/10.1890/08-0134.1

  doi

  10.1890/08-0134.1

  number

  5

  publisher

  Wiley

  month

  5

• Agent-based evacuation model of large public buildings under fire conditions

  Jianyong Shi, Aizhu Ren, Chi Chen

  2009Automation in ConstructionVol. 18pp. 338–347

  DOI: 10.1016/j.autcon.2008.09.009

  Full record

  Citation key

  shi-etal-2009

  Entry type

  article

  issn

  0926-5805

  url

  http://dx.doi.org/10.1016/j.autcon.2008.09.009

  doi

  10.1016/j.autcon.2008.09.009

  number

  3

  publisher

  Elsevier BV

  month

  5

• Inherent noise can facilitate coherence in collective swarm motion

  Christian A. Yates, Radek Erban, Carlos Escudero, Iain D. Couzin, Camille Buhl, et al.

  2009Proceedings of the National Academy of SciencesVol. 106pp. 5464–5469

  DOI: 10.1073/pnas.0811195106

  Full record

  Citation key

  yates-etal-2009

  Entry type

  article

  issn

  1091-6490

  url

  http://dx.doi.org/10.1073/pnas.0811195106

  doi

  10.1073/pnas.0811195106

  number

  14

  publisher

  National Academy of Sciences

  month

  4

• Using neural networks and cellular automata for modelling intra‐urban land‐use dynamics

  C. M. Almeida, J. M. Gleriani, E. F. Castejon, B. S. Soares‐Filho

  2008International Journal of Geographical Information ScienceVol. 22pp. 943–963

  DOI: 10.1080/13658810701731168

  Full record

  Citation key

  almeida-etal-2008

  Entry type

  article

  issn

  1362-3087

  url

  http://dx.doi.org/10.1080/13658810701731168

  doi

  10.1080/13658810701731168

  number

  9

  publisher

  Informa UK Limited

  month

  9

• A synthetic Escherichia coli predator–prey ecosystem

  Frederick K Balagaddé, Hao Song, Jun Ozaki, Cynthia H Collins, Matthew Barnet, et al.

  2008Molecular Systems BiologyVol. 4

  DOI: 10.1038/msb.2008.24

  Full record

  Citation key

  balagadde-etal-2008

  Entry type

  article

  issn

  1744-4292

  url

  http://dx.doi.org/10.1038/msb.2008.24

  doi

  10.1038/msb.2008.24

  number

  1

  publisher

  Springer Science, Business Media LLC

  month

  4

• Quorum decision-making facilitates information transfer in fish shoals

  Ashley J. W. Ward, David J. T. Sumpter, Iain D. Couzin, Paul J. B. Hart, Jens Krause

  2008Proceedings of the National Academy of SciencesVol. 105pp. 6948–6953

  DOI: 10.1073/pnas.0710344105

  Full record

  Citation key

  ward-etal-2008

  Entry type

  article

  issn

  1091-6490

  url

  http://dx.doi.org/10.1073/pnas.0710344105

  doi

  10.1073/pnas.0710344105

  number

  19

  publisher

  National Academy of Sciences

  month

  5

• Cellular automata for simulating land use changes based on support vector machines

  Qingsheng Yang, Xia Li, Xun Shi

  2008Computers & GeosciencesVol. 34pp. 592–602

  DOI: 10.1016/j.cageo.2007.08.003

  Full record

  Citation key

  yang-etal-2008

  Entry type

  article

  issn

  0098-3004

  url

  http://dx.doi.org/10.1016/j.cageo.2007.08.003

  doi

  10.1016/j.cageo.2007.08.003

  number

  6

  publisher

  Elsevier BV

  month

  6

• Combination of process-oriented and pattern-oriented models of land-use change in a mountain area of Vietnam

  Jean-Christophe Castella, Peter H. Verburg

  2007Ecological ModellingVol. 202pp. 410–420

  DOI: 10.1016/j.ecolmodel.2006.11.011

  Full record

  Citation key

  castella-verburg-2007

  Entry type

  article

  issn

  0304-3800

  url

  http://dx.doi.org/10.1016/j.ecolmodel.2006.11.011

  doi

  10.1016/j.ecolmodel.2006.11.011

  number

  3-4

  publisher

  Elsevier BV

  month

  4

• The coevolution of parochial altruism and war

  Jung-Kyoo Choi, Samuel Bowles

  2007ScienceVol. 318pp. 636–640

  DOI: 10.1126/science.1144237

  Full record

  Citation key

  choi-bowles-2007

  Entry type

  article

  issn

  1095-9203

  url

  http://dx.doi.org/10.1126/science.1144237

  doi

  10.1126/science.1144237

  number

  5850

  publisher

  American Association for the Advancement of Science (AAAS)

  month

  10

• Via freedom to coercion: The emergence of costly punishment

  Christoph Hauert, Arne Traulsen, Hannelore Brandt, Martin A. Nowak, Karl Sigmund

  2007ScienceVol. 316pp. 1905–1907

  DOI: 10.1126/science.1141588

  Full record

  Citation key

  hauert-etal-2007

  Entry type

  article

  issn

  1095-9203

  url

  http://dx.doi.org/10.1126/science.1141588

  doi

  10.1126/science.1141588

  number

  5833

  publisher

  American Association for the Advancement of Science (AAAS)

  month

  6

• Macroscopic effects of microscopic forces between agents in crowd models

  Colin M. Henein, Tony White

  2007Physica A: Statistical Mechanics and its ApplicationsVol. 373pp. 694–712

  DOI: 10.1016/j.physa.2006.06.023

  Full record

  Citation key

  henein-white-2007

  Entry type

  article

  issn

  0378-4371

  url

  http://dx.doi.org/10.1016/j.physa.2006.06.023

  doi

  10.1016/j.physa.2006.06.023

  publisher

  Elsevier BV

  month

  1

• Cooperation and conflict in microbial biofilms

  Joao B. Xavier, Kevin R. Foster

  2007Proceedings of the National Academy of SciencesVol. 104pp. 876–881

  DOI: 10.1073/pnas.0607651104

  Full record

  Citation key

  xavier-foster-2007

  Entry type

  article

  issn

  1091-6490

  url

  http://dx.doi.org/10.1073/pnas.0607651104

  doi

  10.1073/pnas.0607651104

  number

  3

  publisher

  National Academy of Sciences

  month

  1

• Simulation for pedestrian dynamics by real-coded cellular automata (RCA)

  Kazuhiro Yamamoto, Satoshi Kokubo, Katsuhiro Nishinari

  2007Physica A: Statistical Mechanics and its ApplicationsVol. 379pp. 654–660

  DOI: 10.1016/j.physa.2007.02.040

  Full record

  Citation key

  yamamoto-etal-2007

  Entry type

  article

  issn

  0378-4371

  url

  http://dx.doi.org/10.1016/j.physa.2007.02.040

  doi

  10.1016/j.physa.2007.02.040

  number

  2

  publisher

  Elsevier BV

  month

  6

• Modeling crowd turbulence by many-particle simulations

  Wenjian Yu, Anders Johansson

  2007Physical Review EVol. 76

  DOI: 10.1103/physreve.76.046105

  Full record

  Citation key

  yu-johansson-2008

  Entry type

  article

  issn

  1550-2376

  url

  http://dx.doi.org/10.1103/PhysRevE.76.046105

  doi

  10.1103/physreve.76.046105

  number

  4

  publisher

  American Physical Society (APS)

  month

  10

• Asymmetric coevolutionary networks facilitate biodiversity maintenance

  Jordi Bascompte, Pedro Jordano, Jens M. Olesen

  2006ScienceVol. 312pp. 431–433

  DOI: 10.1126/science.1123412

  Full record

  Citation key

  bascompte-etal-2006

  Entry type

  article

  issn

  1095-9203

  url

  http://dx.doi.org/10.1126/science.1123412

  doi

  10.1126/science.1123412

  number

  5772

  publisher

  American Association for the Advancement of Science (AAAS)

  month

  4

• Allometric scaling enhances stability in complex food webs

  Ulrich Brose, Richard J. Williams, Neo D. Martinez

  2006Ecology LettersVol. 9pp. 1228–1236

  DOI: 10.1111/j.1461-0248.2006.00978.x

  Full record

  Citation key

  brose-etal-2006

  Entry type

  article

  issn

  1461-0248

  url

  http://dx.doi.org/10.1111/j.1461-0248.2006.00978.x

  doi

  10.1111/j.1461-0248.2006.00978.x

  number

  11

  publisher

  Wiley

  month

  10

• The evolution of ethnocentrism

  Ross A. Hammond, Robert Axelrod

  2006Journal of Conflict ResolutionVol. 50pp. 926–936

  DOI: 10.1177/0022002706293470

  Full record

  Citation key

  hammond-axelrod-2006

  Entry type

  article

  issn

  1552-8766

  url

  http://dx.doi.org/10.1177/0022002706293470

  doi

  10.1177/0022002706293470

  number

  6

  publisher

  SAGE Publications

  month

  12

• Flocking for multi-agent dynamic systems: Algorithms and theory

  R. Olfati-Saber

  2006IEEE Transactions on Automatic ControlVol. 51pp. 401–420

  DOI: 10.1109/tac.2005.864190

  Full record

  Citation key

  olfati-saber-2006

  Entry type

  article

  issn

  0018-9286

  url

  http://dx.doi.org/10.1109/TAC.2005.864190

  doi

  10.1109/tac.2005.864190

  number

  3

  publisher

  Institute of Electrical, Electronics Engineers (IEEE)

  month

  3

• Modeling crowd and trained leader behavior during building evacuation

  Nuria Pelechano, Norman Badler

  2006IEEE Computer Graphics and ApplicationsVol. 26pp. 80–86

  DOI: 10.1109/mcg.2006.133

  Full record

  Citation key

  pelechano-badler-2006

  Entry type

  article

  issn

  0272-1716

  url

  http://dx.doi.org/10.1109/mcg.2006.133

  doi

  10.1109/mcg.2006.133

  number

  6

  publisher

  Institute of Electrical, Electronics Engineers (IEEE)

  month

  11

• Cooperation prevails when individuals adjust their social ties

  Francisco C Santos, Jorge M Pacheco, Tom Lenaerts

  2006PLoS Computational BiologyVol. 2pp. e140

  DOI: 10.1371/journal.pcbi.0020140

  Full record

  Citation key

  santos-etal-2006

  Entry type

  article

  issn

  1553-7358

  url

  http://dx.doi.org/10.1371/journal.pcbi.0020140

  doi

  10.1371/journal.pcbi.0020140

  number

  10

  publisher

  Public Library of Science (PLoS)

  editor

  Luis Amaral

  month

  10

• Virtual leader approach to coordinated control of multiple mobile agents with asymmetric interactions

  Hong Shi, Long Wang, Tianguang Chu

  2006Physica D: Nonlinear PhenomenaVol. 213pp. 51–65

  DOI: 10.1016/j.physd.2005.10.012

  Full record

  Citation key

  shi-etal-2006

  Entry type

  article

  issn

  0167-2789

  url

  http://dx.doi.org/10.1016/j.physd.2005.10.012

  doi

  10.1016/j.physd.2005.10.012

  number

  1

  publisher

  Elsevier BV

  month

  1

• Modelling conservation in the Amazon basin

  Britaldo Silveira Soares-Filho, Daniel Curtis Nepstad, Lisa M. Curran, Gustavo Coutinho Cerqueira, Ricardo Alexandrino Garcia, et al.

  2006NatureVol. 440pp. 520–523

  DOI: 10.1038/nature04389

  Full record

  Citation key

  soares-filho-etal-2006

  Entry type

  article

  issn

  1476-4687

  url

  http://dx.doi.org/10.1038/nature04389

  doi

  10.1038/nature04389

  number

  7083

  publisher

  Springer Science, Business Media LLC

  month

  3

• Participatory simulation of land-use changes in the northern mountains of vietnam: the combined use of an agent-based model, a role-playing game, and a geographic information system

  Jean-Christophe Castella, Tran Ngoc Trung, Stanislas Boissau

  2005Ecology and SocietyVol. 10

  DOI: 10.5751/es-01328-100127

  Full record

  Citation key

  castella-etal-2005

  Entry type

  article

  issn

  1708-3087

  url

  http://dx.doi.org/10.5751/ES-01328-100127

  doi

  10.5751/es-01328-100127

  number

  1

  publisher

  Resilience Alliance, Inc.

• The impact of interactions in spatial simulation of the dynamics of urban sprawl

  Shoufan Fang, George Z. Gertner, Zhanli Sun, Alan A. Anderson

  2005Landscape and Urban PlanningVol. 73pp. 294–306

  DOI: 10.1016/j.landurbplan.2004.08.006

  Full record

  Citation key

  fang-etal-2005

  Entry type

  article

  issn

  0169-2046

  url

  http://dx.doi.org/10.1016/J.LANDURBPLAN.2004.08.006

  doi

  10.1016/j.landurbplan.2004.08.006

  number

  4

  publisher

  Elsevier BV

  month

  12

• Team assembly mechanisms determine collaboration network structure and team performance

  Roger Guimerà, Brian Uzzi, Jarrett Spiro, Luís A. Nunes Amaral

  2005ScienceVol. 308pp. 697–702

  DOI: 10.1126/science.1106340

  Full record

  Citation key

  guimera-etal-2005

  Entry type

  article

  issn

  1095-9203

  url

  http://dx.doi.org/10.1126/science.1106340

  doi

  10.1126/science.1106340

  number

  5722

  publisher

  American Association for the Advancement of Science (AAAS)

  month

  4

• Self-organized pedestrian crowd dynamics: Experiments, simulations, and design solutions

  Dirk Helbing, Lubos Buzna, Anders Johansson, Torsten Werner

  2005Transportation ScienceVol. 39pp. 1–24

  DOI: 10.1287/trsc.1040.0108

  Full record

  Citation key

  helbing-etal-2005

  Entry type

  article

  issn

  1526-5447

  url

  http://dx.doi.org/10.1287/trsc.1040.0108

  doi

  10.1287/trsc.1040.0108

  number

  1

  publisher

  Institute for Operations Research, the Management Sciences (INFORMS)

  month

  2

• Modifications of the helbing-molnár-farkas-vicsek social force model for pedestrian evolution

  Taras I. Lakoba, D. J. Kaup, Neal M. Finkelstein

  2005SIMULATIONVol. 81pp. 339–352

  DOI: 10.1177/0037549705052772

  Full record

  Citation key

  lakoba-etal-2005

  Entry type

  article

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• A computer model for the evacuation of large building populations

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